HsaEX6063211 @ hg38
Exon Skipping
Gene
ENSG00000167110 | GOLGA2
Description
golgin A2 [Source:HGNC Symbol;Acc:HGNC:4425]
Coordinates
chr9:128255829-128257707:-
Coord C1 exon
chr9:128257601-128257707
Coord A exon
chr9:128257369-128257525
Coord C2 exon
chr9:128255829-128257281
Length
157 bp
Sequences
Splice sites
3' ss Seq
CTTAGCACCCCTCCCTCCAGGTG
3' ss Score
9.17
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GAGAGTACATTGCACTGTACCAGAGCCAGAGGGCAGTGCTGAAGGAGCGGCACCGGGAGAAGGAGGAGTACATCAGCAGGCTGGCCCAAGACAAGGAGGAGATGAAG
Seq A exon
GTGAAGCTGCTGGAGCTGCAGGAGCTGGTCTTACGGCTTGTGGGCGACCGCAACGAGTGGCATGGCAGATTCCTGGCAGCTGCCCAGAACCCTGCTGATGAGCCCACTTCAGGGGCCCCAGCCCCCCAGGAACTTGGGGCTGCCAACCAGCAGGGTG
Seq C2 exon
ATCTTTGCGAGGTGAGCCTCGCCGGCAGTGTGGAGCCTGCCCAAGGAGAGGCCAGGGAGGGTTCTCCCCGTGACAACCCCACTGCACAGCAGATCATGCAGCTGCTTCGTGAGATGCAGAACCCCCGGGAGCGCCCAGGCTTGGGCAGCAACCCCTGCATTCCTTTTTTTTACCGGGCTGACGAGAATGATGAGGTGAAGATCACTGTCATCTAAAAGCCGGCTACTGTCAGCAAAGCCTGAAGAAGTGGGGCTGGATACCCTGCCCCCACCATATCCCTACCATCCCTTCTCAGTCAACCCTTTACCCTTACAGTAGCAAGCATAGACCCCTGTCTAACGGGGGTAGACAGGTGCAGATGAGGTGAAGATCACTGTCATCTAAAAGCTGGCCACTAAATTAAAAAAAAATTAAAAGTTATGGGATTAAAAAAAGTTATGGGATAAAAAAGGTTATGGGTAACTTATGGTATAAAAGTTATGAAAAAAGGCCAGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167110-'50-57,'50-55,51-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.547 C2=0.775
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(12.2=100),PF078886=CALCOCO1=FE(27.8=100)
A:
PF150701=GOLGA2L5=FE(18.2=100),PF078886=CALCOCO1=PD(31.0=73.6)
C2:
PF150701=GOLGA2L5=PD(11.3=97.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGGGAGAAGGAGGAGTAC
R:
ATCATTCTCGTCAGCCCGGTA
Band lengths:
248-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains