RnoEX6016427 @ rn6
Exon Skipping
Gene
ENSRNOG00000011884 | Golga2
Description
golgin A2 [Source:RGD Symbol;Acc:620282]
Coordinates
chr3:11335618-11336458:+
Coord C1 exon
chr3:11335618-11335724
Coord A exon
chr3:11335803-11335959
Coord C2 exon
chr3:11336046-11336458
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCGAGCTCCTTTTTCTCCAGGTA
3' ss Score
8.24
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GAGAGTACATTGCCCTCTACCAAAACCAGAGGGCAGTGCTGAAGGCTCGGCATTTGGAGAAGGAAGAGTATATCAGCCGGCTGGCTCAGGACAAGGAGGAGATGAAG
Seq A exon
GTAAAACTGCTAGAGCTTCAGGAGCTGGTGTTGAGGCTTGTGAACGAGCGCAATGAATGGCAGGGCAAGTTCCTGGCCGTGTCTCAGAACCCTGCTGATGTGCCTGCCCCAGTGCCCACAGGCTCCCAGGAATTTGGCGCTGCTGACCAGCAAGGTG
Seq C2 exon
ACCTCAGGGAGGTGAGCCTGGCTGACGATACAGAGCCTGCACAAGGAGAGGCAGGGGTACCCGCTCCCCAGGAGAACCCCACTGCACAACAGATCATGCAGCTGCTGCGTGAGATCCAGAACCCCCAGGAGCGCCCAGGCCTGGGTAGCAACCCTTGCATCCCCTTTTTCTACCGTGCGGATGAGAACGACGAGGTGAAAATCATGGTTATATAAGAGACTTTCGGCCAAAGCCTCACCAAGGGCAGCCAGAAGTTCTGCCCACCCCACCCCCTTCCCCAGCCACCCTATCCTTAATAATAAGGTCAGACCCCGCCCTCCAGGGGCTGGGGAAGNNNNNNNNNNNNNNNNNNNNNTGCCTGCCATGCACATAGCCCTGGGTCCCCAGCGCCCCTGAAAAGGCTGATACCTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011884-'37-43,'37-42,39-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.453 C2=0.761
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(5.7=100)
A:
PF150701=GOLGA2L5=FE(8.4=100)
C2:
PF150701=GOLGA2L5=PD(11.3=97.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCTCGGCATTTGGAGAAG
R:
CGCACGGTAGAAAAAGGGGAT
Band lengths:
245-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]