BtaEX6046385 @ bosTau6
Exon Skipping
Description
Bos taurus golgin A2 (GOLGA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192195]
Coordinates
chr11:98879338-98879971:-
Coord C1 exon
chr11:98879865-98879971
Coord A exon
chr11:98879638-98879791
Coord C2 exon
chr11:98879338-98879552
Length
154 bp
Sequences
Splice sites
3' ss Seq
CTGAGTATCTCTCCCTCCAGGTG
3' ss Score
10.32
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GAGAGTATATCGCCCTCTATCAGAGTCAGAGGGCGGTGCTGAAGGCCCGGCATCAGGAGAAGGAGGAATACATTAGCCGGCTGGCTCAGGACAAGGAGGAGATGAAG
Seq A exon
GTGAAGCTGTTGGAGCTCCAGGAACTGGTTTTATGCCTGGTGGGTGAACGAAATGAATGGTATGGCAAATTCCTGGCTGCCCAGAACCCTGCTGGTGAGCCCACTACAGCGCCCCACACCTGCCAGGAGCCCAGCACTGCTGACAGTGAGGGTG
Seq C2 exon
GTCTCCAAGAGGTGAGCCTCGCCGACACTGTGGAGCCCCAGCAGGGGACCCTGCCGGGCCAGACCACCCCTGAGAACCCCACCGCGCAACAGATCATGCAGCTGCTGCGTGAGATCCAAAACCCCCAGGAGCACCCAGGCTTGGGCAGCAACCCTTGCATCCCCTTCTTCTACCGAGCTGATGACAATGACGAAGTGAAGATCATGGTGATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011317-'31-30,'31-29,32-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.538 C2=0.789
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(5.7=100)
A:
PF150701=GOLGA2L5=FE(8.2=100)
C2:
PF150701=GOLGA2L5=PD(11.3=97.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCATCAGGAGAAGGAGGAA
R:
CGTCATTGTCATCAGCTCGGT
Band lengths:
252-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]