MmuEX6100514 @ mm10
Exon Skipping
Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32305977-32307921:+
Coord C1 exon
chr2:32305977-32306083
Coord A exon
chr2:32306160-32306316
Coord C2 exon
chr2:32306406-32307921
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTGAGCTCCTTTTTCTCCAGGTG
3' ss Score
10.01
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GAGAGTACATTGCCCTTTACCAAAATCAGAGGGCGGTGCTGAAGGCTCGGCATTTGGAGAAGGAAGAATACATCAGCCGGCTGGCTCAGGACAAGGAGGAGATGAAG
Seq A exon
GTGAAGCTGCTGGAGCTCCAGGAGCTGGTGTTGAGGCTTGTGAACGAGCGCAATGAATGGCAGGGCAAGTTCCTGGCCGTCTCTCAGAACCCTGGTGACGTGCTCACCCCAGTGCCCACAGGCTCCCAGGAATTTGGTGCTGCTGACCAGCAGGATG
Seq C2 exon
ACCTCAGGGAGGTGAGCCTGGCTGACGATATAGAGCCTGCACAAGGAGAGGCAGGGGTACCTGCTCCCCATGAGAACCCTACTGCACAGCAGATCATGCAGCTGCTGCGTGAGATCCAGAACCCCCGGGAGCGGCCAGGCCTGGGTAGCAACCCTTGCATCCCCTTTTTCTACCGTGCCGATGAGAACGACGAGGTGAAGATCATGGTTGTATAAAAGACTGGCGGCCAAAGCCTCAGCAAGGGCAGCCAGAGGTTCTGCCCCAACCCACACCCTTCCTCAGCCACCCTTATCTTTATAATAATAATAAGGTCAGACTCCATCCCCTCCAGGGGCTGGGGAAGTAGCTCAGTTGGTAGAGTGCTTGCCTGCTGTGCACACAGCCTTGGGTCCCCAGTACCTCTGAAAAGGCTGATACCTGTAATTTGAGTGCTTGGGAAGTGGAGGTGGAAGAATCAGCCATCCTCATCTACCTAGTGAGTTTGAGGCCACACTGGGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546-'52-57,'52-55,53-57
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.358 C2=0.690
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(5.7=100)
A:
PF150701=GOLGA2L5=FE(8.4=100)
C2:
PF150701=GOLGA2L5=PD(11.3=97.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCTCGGCATTTGGAGAAG
R:
GGCACGGTAGAAAAAGGGGAT
Band lengths:
245-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types