DreEX0035468 @ danRer10
Exon Skipping
Gene
ENSDARG00000063197 | golga2
Description
golgin A2 [Source:ZFIN;Acc:ZDB-GENE-081030-1]
Coordinates
chr5:1375388-1381494:-
Coord C1 exon
chr5:1381388-1381494
Coord A exon
chr5:1378596-1378764
Coord C2 exon
chr5:1375388-1378305
Length
169 bp
Sequences
Splice sites
3' ss Seq
GTCGTGTGTGTTGTGTTTAGACG
3' ss Score
6.61
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGAATACATCGCGCTGTATCAGAACCAGAGAGCCATCATGAAGCAAAAGCACGTTGAAAAGGAGCAGTACATTAACATGCTGGCCAAAGACAAGGAGGAGATGAAG
Seq A exon
ACGAAGCTGGCGGAGCTGCAGGATCTGGTGATGCGTCTGGTGGGCGAGCGTAACGAGTGGTACAGCAGATATATGAGCGCTGTGGGAAACCGGGATCTGCTGAACTCTAATGCGGAGCAGATCCATCCTGCAGAGAGACGCATGGAGATCAGCGGTGTGGACGCTCCAG
Seq C2 exon
CTGTTCTGGACATGAGCACAGCAATGGACGTGTCTTCATCTCCTCAGTCCAGCACAGCAGAGATTCAATCCCAGAGTTCAGAACGGCCTGCAGCTGACCCAATCTCCAGCCCGTCCCTGAGACCCCAAGAAGACGGGACAGCCCGCCAGATCATGCAGCTTCTCCAGGAGATCCAGAATCCTCAATCCAGACCCGCTCCATTCCTCGGAGAAAACCCCTGCATCCCGTTCTTCTACCGGCCCGACGAGCACGACGAGGTCAAGATCCTGGTGGTCTGAATCCAGCATTATTAGGGACACAGACGTGCGTTTTCACTCAGTTTCTCTGGATTTCTAGAGGAATTCTGGACTTCTGAAGCTCTGTTTGGTTTGTGTGTCGATTCATACGGATGCCAGCTCTTGCTGCTCTCGACTGATTTGCAGATTAGTTCACTTTAAGTGCATTAGACAGAGTTTCCTGACAGATCAGTGATGATTCAGAGCGGTAAGATTCATTGATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063197-'35-35,'35-34,36-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.333 C2=0.728
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(5.3=100)
A:
PF150701=GOLGA2L5=FE(8.5=100)
C2:
PF150701=GOLGA2L5=PD(13.8=97.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAAAGACAAGGAGGAGA
R:
GGGGTTTTCTCCGAGGAATGG
Band lengths:
244-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]