GgaEX6015086 @ galGal4
Exon Skipping
Gene
ENSGALG00000004719 | SPTAN1
Description
spectrin alpha chain, non-erythrocytic 1 [Source:RefSeq peptide;Acc:NP_001036003]
Coordinates
chr17:5169435-5170505:+
Coord C1 exon
chr17:5169435-5169632
Coord A exon
chr17:5169754-5169900
Coord C2 exon
chr17:5170402-5170505
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTGGAGTTTTTCCTCTTTAGCTG
3' ss Score
5.85
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAGCACCGTACTGAAATAGATGCACGGGCTGGCACTTTTCAGGCATTTGAACAGTTTGGACAGCAGCTTCTGGCTCGTGGACACTATGCCAGCCCAGAGATTAAGGAGAAACTGGATATTCTAGATCAAGAACGGACAGACCTAGAGAAGGCCTGGGTCCAGCGCAGAATGATGCTAGACCAGTGCTTAGAACTACAG
Seq A exon
CTGTTTCATCGGGATTGTGAACAAGCTGAAAACTGGATGGCTGCCCGAGAGGCGTTCCTAAATACAGAAGACAAAGGAGACTCCTTAGACAGCGTGGAGGCACTCATCAAGAAGCATGAAGATTTCGATAAAGCAATCAATGTCCAG
Seq C2 exon
GAAGAGAAAATTGCTGTCTTGCAGTCTTTTGCTGACCAACTGATTGCTGCTGATCATTATGCAAAAGGAGTCATTGCTAACAGACGCAATGAGGTTCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004719-'53-56,'53-54,54-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(57.1=90.9),PF0043516=Spectrin=PU(2.9=4.5)
A:
PF0043516=Spectrin=FE(45.7=100)
C2:
PF0043516=Spectrin=FE(32.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGGACAGCAGCTTCTGG
R:
CCAGAACCTCATTGCGTCTGT
Band lengths:
246-393
Functional annotations
There are 1 annotated functions for this event
PMID: 9712874
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: classical fluorescence spectroscopy, cleavage reaction, glutathione s tranferase tag, western blot. ELM ID: ELMI001910; ELM sequence: DSLDS; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]