GgaEX6015424 @ galGal3
Exon Skipping
Gene
ENSGALG00000002364 | SEC16A
Description
NA
Coordinates
chr17:8554210-8555329:+
Coord C1 exon
chr17:8554210-8554414
Coord A exon
chr17:8554594-8554842
Coord C2 exon
chr17:8555241-8555329
Length
249 bp
Sequences
Splice sites
3' ss Seq
TAACTTTTTTTGTACCTTAGCTC
3' ss Score
6.31
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
Exon sequences
Seq C1 exon
GAGGGTGCAATTGCTTATAGCACAGACAGATCCACGCCACAGCAGTACCCATGTAGCACACCAAGCTCTGAATTAGACCATACCAGTCAATATGATGGAGCAGGAGTTGGCCACGACATGGTCCCAGGTGCTGAAAATGCATTGTTAGCATCCTTATTGCCCAATATGGCTCAACAGATGCAAAGCGTGCAGCTGATGCCTTCAG
Seq A exon
CTCCTCAGGCTATACTTGATGGGTCAACTGCTGGGATTCCACCTAGTGACCAGGAAGCTGTCCAAAGTGTCCCTTTCTATCCTGTGGCTCCTCAGCCTATTGGTCCAGGACCTGGCTTTGCACCTCCGGGGTTTTCAAATCAGTATGGAGCTGAGCCATCGCCGCTGTATTTGGGGTCAACGCTACCACCAGGAGGGCCACCACAAGAAACTGAACCACGGGAGGAAGAGCAGACAAAGCTGGAAACAG
Seq C2 exon
GAATGCAGAGAATTGCCTCAGAGTCTCCTTCACGAAACTCTTTTCCTGAGCAGAGAGAGGAAGATTTCTACAGCAGAATGGCTAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002364-'21-25,'21-24,22-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.783 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGTGCAATTGCTTATAGC
R:
CATTCTAGCCATTCTGCTGTAGA
Band lengths:
294-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]