BtaEX6047216 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023933 | SEC16A
Description
SEC16 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr11:103946209-103947421:-
Coord C1 exon
chr11:103947229-103947421
Coord A exon
chr11:103946682-103946912
Coord C2 exon
chr11:103946209-103946291
Length
231 bp
Sequences
Splice sites
3' ss Seq
TTCTGCACCGTCTCCTGCAGCTC
3' ss Score
8.74
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAGGGTGCTGTGGCCTGGAGTCAGGACGGAGCCTGCCCCCCACACTGCCCCAGCTCACCAAGCCCTGAGGTGGGGCCCCGTGACGGCCCAGAACCCACCCAGCTGGTGGGCCTGGGTGCCGACAACCCACTGCTGGCCCCGCCAGTGACCGGCGCCGAGCTCTTAAGCCAGGATGTGCGGCTGCTGCCCTCAG
Seq A exon
CTCCTCTGACGCTCCCCGATGGCCCAGCAGCCATTCCCGTCCGGGTGCCCATGTTCCCCGTGCCACTGCCAGGTCCTGTCGAGCTGGGGCCCGTACATGGTCCCCCAGGGGCTGTACCTGGCTTTCCAGAGCCCTCTGGGCCTGACCCTGTGGCCCTGTACCCCGGACCTGGGGTGCCACCTCTCCAGGAAACGGACCGCCTGCTCCCGGAGGCCAGGGGCCAGGACACAG
Seq C2 exon
GGGTGGTGCCGCAGGAGACACCCGGCAGAAGCTCGCGCTCGGAGCCGGGAGAGGAGGAGTTTGGTGGGAACTTCGCTGATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023933-'25-27,'25-25,26-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.831 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGTGCTGTGGCCTGG
R:
CGTATCAGCGAAGTTCCCACC
Band lengths:
276-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]