GgaEX6015424 @ galGal4
Exon Skipping
Gene
ENSGALG00000002364 | SEC16A
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr17:7865114-7866233:+
Coord C1 exon
chr17:7865114-7865318
Coord A exon
chr17:7865498-7865746
Coord C2 exon
chr17:7866145-7866233
Length
249 bp
Sequences
Splice sites
3' ss Seq
TAACTTTTTTTGTACCTTAGCTC
3' ss Score
6.31
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
Exon sequences
Seq C1 exon
GAGGGTGCAATTGCTTATAGCACAGACAGATCCACGCCACAGCAGTACCCATGTAGCACACCAAGCTCTGAATTAGACCATACCAGTCAATATGATGGAGCAGGAGTTGGCCACGACATGGTCCCAGGTGCTGAAAATGCATTGTTAGCATCCTTATTGCCCAATATGGCTCAACAGATGCAAAGCGTGCAGCTGATGCCTTCAG
Seq A exon
CTCCTCAGGCTATACTTGATGGGTCAACTGCTGGGATTCCACCTAGTGACCAGGAAGCTGTCCAAAGTGTCCCTTTCTATCCTGTGGCTCCTCAGCCTATTGGTCCAGGACCTGGCTTTGCACCTCCGGGGTTTTCAAATCAGTATGGAGCTGAGCCATCGCCGCTGTATTTGGGGTCAACGCTACCACCAGGAGGGCCACCACAAGAAACTGAACCACGGGAGGAAGAGCAGACAAAGCTGGAAACAG
Seq C2 exon
GAATGCAGAGAATTGCCTCAGAGTCTCCTTCACGAAACTCTTTTCCTGAGCAGAGAGAGGAAGATTTCTACAGCAGAATGGCTAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002364-'24-29,'24-27,25-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.783 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGTGCAATTGCTTATAGC
R:
CATTCTAGCCATTCTGCTGTAGA
Band lengths:
294-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]