RnoEX6015990 @ rn6
Exon Skipping
Gene
ENSRNOG00000019122 | Sec16a
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:RGD Symbol;Acc:2322350]
Coordinates
chr3:3868091-3870350:-
Coord C1 exon
chr3:3870167-3870350
Coord A exon
chr3:3868716-3868961
Coord C2 exon
chr3:3868091-3868173
Length
246 bp
Sequences
Splice sites
3' ss Seq
TTCTCCACTCTCCCCTACAGCTC
3' ss Score
10.29
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GAGGGCACTGTGCTGTGGAACCAGGATGGAACTGAACCCCAGCAGTGTCACATCACATCGGGCTCTGAGGTGGAGCAGCCAGATGGCCCTGGACTCAACCAGCAGGCAGGGCCAAGGGCCGACAACCCTCTCCTGATGCCAAGCACTGAGCCTTTGGTGCACAGCGTGCAGCTGCTGCCCACAG
Seq A exon
CTCCTCAGACATTGCCTGATGGCCAGCCTGCTCACCTTGCCAGGGTGCCCATGTTCCCAGTACCAATGTCTCGTCCCCCCCTGGAGCTGAGTGCTGCCTATGGACCCCCGGGGTCTGTACTTGGCTTCCCAGAATCCTCCAGATCTGATCCTGCAGTGCTGCATCCTGGGCAGGCCCTACCACCCGCTACACCAGGTCTCCAGGAAAGTGGGCCACCACTCCAGGAGGCCAGAAGCCCAGATCCAG
Seq C2 exon
AAATGGTGCCACAGGGCTCACCTGTCAGACACTCCCCTCCTGAGCCCCGTGAAGAGGAGTTTGGCAAGAACGTCGCTGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019122-'28-30,'28-28,29-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.919 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCTGTGGAACCAGGATG
R:
CAGGTCAGCGACGTTCTTGC
Band lengths:
260-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]