GgaEX6015680 @ galGal3
Exon Skipping
Gene
ENSGALG00000000847 | GARNL3
Description
NA
Coordinates
chr17:11160653-11162589:+
Coord C1 exon
chr17:11160653-11160757
Coord A exon
chr17:11161438-11161512
Coord C2 exon
chr17:11162478-11162589
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTTTAATTAAATTGTATTAGGCA
3' ss Score
4.37
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AACATGCTGAACAGAAGGTCCTTCAGTGATGTGTTACCAGACTCCCCAAAATCAACACGGAAGAAGGAGGAAGCTCGGCAAGCAGAATTTGTCCGACTTGGTCAG
Seq A exon
GCACTCAAACTGAAAACTGGTGTGAAAGGGGATGCACCAACTACCTTGGCAACTACAAGCTTTTGTAAAAAGGAG
Seq C2 exon
CCTTGGGAGTCCCAGTCTTTCTGCAGTAATTTTCCTCATGAGGTTGTCTGTGCAGATTCTTGGGGCCAGTCCTTGCTGGTTTCTACAGATGCTGGCATCTTGTTAATAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847-'26-27,'26-25,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.505 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0078017=CNH=PU(7.3=57.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCTGAACAGAAGGTCCT
R:
CAAGGACTGGCCCCAAGAATC
Band lengths:
179-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]