MmuEX6100681 @ mm10
Exon Skipping
Gene
ENSMUSG00000038860 | Garnl3
Description
GTPase activating RANGAP domain-like 3 [Source:MGI Symbol;Acc:MGI:2139309]
Coordinates
chr2:33011400-33016789:-
Coord C1 exon
chr2:33016685-33016789
Coord A exon
chr2:33015186-33015260
Coord C2 exon
chr2:33011400-33011511
Length
75 bp
Sequences
Splice sites
3' ss Seq
GGGATATCTCTGTTCATCAGGCC
3' ss Score
4.56
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
AATATGCTCAATCGGCGATCTTTTAGTGATGTTTTACCGGAGTCACCCAAGTCAGCACGGAAAAAAGAGGAGGCCCGGCAGGCCGAGTTTGTGAGAATAGGGCAG
Seq A exon
GCCCTGAAGCTCAAGTCCATTGTGAGAGGGGACGCCCCATCAAGCTTGGCAGCATCAGGGATGTGTAAAAAAGAG
Seq C2 exon
CCTTGGGAGCCCCAGTGTTTCTGCTGTAATTTCCCTCATGAAGCCGTGTGTGCAGATCCCTGGGGCCAGGCCTTGCTGGTTTCCACGGATGCTGGCGTCTTGCTAGTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038860-'39-38,'39-36,41-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=0.080 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0078017=CNH=PU(7.2=57.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCGGAGTCACCCAAGTCAG
R:
CACTAGCAAGACGCCAGCATC
Band lengths:
179-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types