BtaEX6046200 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006948 | GARNL3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:HGNC Symbol;Acc:HGNC:25425]
Coordinates
chr11:98110251-98114212:+
Coord C1 exon
chr11:98110251-98110355
Coord A exon
chr11:98111511-98111585
Coord C2 exon
chr11:98114101-98114212
Length
75 bp
Sequences
Splice sites
3' ss Seq
AGAGATCTCTGTTCTGTAAGGCA
3' ss Score
-0.24
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AACATGCTTAATAGACGATCTTTCAGTGACGTCTTACCGGAATCGCCCAAGTCAGCGAGGAAGAAAGAAGAGGCCCGCCAGGCAGAGTTCGTTAGAATAGGACAG
Seq A exon
GCACTAAAGCTGAAATCCATCGTGAGAGGGGATGCTCCATCAAGCTTGGTGGCATCAGGGATCTGTAAAAAGGAG
Seq C2 exon
CCTTGGGAGCCACAGTGTTTCTGCAGTAACTTCCCTCATGAGGCCGTGTGTGCGGATCCCTGGGGCCAGGCCTTGCTGGTTTCCACTGATGCCGGCGTCTTGCTAGTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006948-'49-19,'49-17,50-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0078017=CNH=PU(7.2=57.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTACCGGAATCGCCCAAG
R:
GGCATCAGTGGAAACCAGCAA
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]