GgaEX6016351 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:7936365-7937902:-
Coord C1 exon
chr18:7937807-7937902
Coord A exon
chr18:7937100-7937310
Coord C2 exon
chr18:7936365-7936523
Length
211 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTTTCCCTCACCCAGGAG
3' ss Score
9.33
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AGACCTAAGAGAAATCTGAGTGTGTTCCAGCAAACTAAAATTCTCTTGTGGAAAAATGTGCTTATCAAATGGAGGATGAAAATGCAGAGTTTTCAG
Seq A exon
GAGTGGATGCTGTCCCTGCTCTTCCTGCCACTGATGTTCATTGTGGGCCACTTCATGATGTACATGCCCTACCCCGAGGTGCCACACAAACACCTGGGGCAGCTGGATGATCCTGCCTACAATGCCACCGGAGTCACCATTGCTTTCACACCCATCACTGCAGCCACCAGGCAGATAATGAACACAGTGGCCTCAAAGTCTGTGATGACAG
Seq C2 exon
GGATAAAACTGGAGGCACTGGACACCGAGAGAGCCTTGGAGGAAGCCGGGATTTTGAATGATGAGATTATAGGAGTTGTATTTAAAAACAACTTCTCCTATCACCTCCGGTTTCCTGCTGGGAACGTGGTTTTTCCAAATGAAAACCTTGAATATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(18.2=98.6)
C2:
PF126982=ABC2_membrane_3=FE(13.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGAGAAATCTGAGTGTGTTCCAGC
R:
TGGAAAAACCACGTTCCCAGC
Band lengths:
228-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]