RnoEX0004951 @ rn6
Exon Skipping
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98292032-98294522:-
Coord C1 exon
chr10:98294427-98294522
Coord A exon
chr10:98293034-98293238
Coord C2 exon
chr10:98292032-98292193
Length
205 bp
Sequences
Splice sites
3' ss Seq
TCTGTTCTTGGGCTGCGTAGGAA
3' ss Score
6.06
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATGATCAAGAGAGAGATAAGTGTGCGCCAACAAACTTGTGCTTTATTACAGAAGAACCTTCTTAAGAAATGGAGACTGAGAAGGGAGACCTTGATG
Seq A exon
GAATGGATGAGCTCATTGCTCCTTCTGCTTTTCTTGTGTTGGTATCCGCATGGTCATGAAGCTACTGACTTTTCCTCAGTGCCCACCAAGGATCTGGGACGAGTCGATTCTTTTACACAATCTGGGTTCATGATAGGGTATACACCTGTCACCAGCACGACCCGACAGATAATGGAGAAGGTAGCTGCTGTCCCTTTCATGGCAG
Seq C2 exon
GTAGAAAAGTCCTGGGACTGTTGGATGAAGAAAACATCAGGGAATTAACAGAAAGTCATCAGGAAGTAATAAGAGTCATTTTCTCTGATACGTTCTCATATCATCTGAAATTTCAATTTGGACAGAGAATCCCAAAGTCAAGGGAACATGGAGATCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(1.0=12.5)
A:
PF126982=ABC2_membrane_3=FE(17.4=100)
C2:
PF126982=ABC2_membrane_3=FE(13.8=100)
Main Skipping Isoform:
ENSRNOT00000005489fB316
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAGAGAGAGATAAGTGTGCGC
R:
CATGATCTCCATGTTCCCTTGACT
Band lengths:
252-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]