GgaEX6016358 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NW73]
Coordinates
chr18:8195948-8196792:-
Coord C1 exon
chr18:8196654-8196792
Coord A exon
chr18:8196344-8196434
Coord C2 exon
chr18:8195948-8196087
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTCTCCTTAGACC
3' ss Score
11.95
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GTGCTGCTCCTGGATGAGCCAACGGCAGGGCTGGATCCTCTTTCCCGGCACCATGTGTGGAACCTCCTTAAGGAGCACAGAGCTGGCCGGGTGATCCTCTTCAGCACCCAGTTCATGGATGAGGCCGACATCCTTGCGG
Seq A exon
ACCGCAAGGCTTTTATCTCACGTGGGAGGCTGAAGTGTGTGGGCTCCTCTTTGTTCTTGAAGAATAAGTGGGGGATCGGCTATCACTTAAG
Seq C2 exon
GATCCATGTCAGTGATTCTTGTGACGTAGAGAATGTGACGTGTCTGGTTAAGCAGTATGTCCCCAAAGTCATATTCTCGGGACATGGTCAATATGAGCTGAGATATAAACTGCCATTAGAAAACGTGAATAAATTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(5.4=17.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCTGGATCCTCTTTCCC
R:
TGCTTAACCAGACACGTCACA
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]