GgaEX6016945 @ galGal3
Exon Skipping
Gene
ENSGALG00000001291 | CLIP2
Description
NA
Coordinates
chr19:2756424-2759097:-
Coord C1 exon
chr19:2758884-2759097
Coord A exon
chr19:2757758-2757955
Coord C2 exon
chr19:2756424-2756527
Length
198 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTAACTCTTCTCCAGCTG
3' ss Score
8.6
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTATTTTCAGTGCCCTCCCAAGTTTGGCCTCTTTGCTCCCATCCACAAGGTGATTCGGATTGGGTTTCCATCAACCAGCCCTGCCAAGGCGAAGAAGAGCAAGCGGATGGCCATGGGAGTGTCTGCCCTCACCCACAGCCCCAGCAGCTCTTCCATCAGCTCCGTCAGCTCCGTGGCTTCCTCTGTTGGGGGCAGACCTAGCCGCAGTGGGCTG
Seq A exon
CTGACAGAGACCTCCTCTCGTTACGCCCGTAAGATCTCTGGCACCACGGCTCTCCAGGAGGCTCTGAAGGAGAAGCAGCAGCACATTGAGCAGCTGCTGGCAGAGCGTGACCTGGAGCGGGCCGAGGTGGCCAAGGCCACCAGCCACATCTGTGAGGTGGAGAAGGAGATCGCCATCATGAAGGCCCAACATGAGCAG
Seq C2 exon
TATGTCACAGAGGCAGAGGGGAATCTGCAGCGAGCACGAGCACTGGTGGATGGGATGCAGAAGGAGAAGATTGAACTGCTGAACCAACTGGAAGAGGAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001291-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=0.136 C2=0.143
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=PD(27.3=25.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTTGGCCTCTTTGCTCCC
R:
CTTCTGCATCCCATCCACCAG
Band lengths:
258-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]