MmuEX6021425 @ mm9
Exon Skipping
Gene
ENSMUSG00000063146 | Clip2
Description
CAP-GLY domain containing linker protein 2 [Source:MGI Symbol;Acc:MGI:1313136]
Coordinates
chr5:134989866-134992899:-
Coord C1 exon
chr5:134992686-134992899
Coord A exon
chr5:134991951-134992148
Coord C2 exon
chr5:134989866-134989969
Length
198 bp
Sequences
Splice sites
3' ss Seq
CCCATGCCCACTCTCTGCAGCTC
3' ss Score
8.91
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTACTTCCAGTGCCCACCCAAGTTCGGTCTCTTTGCACCAATCCACAAGGTCATCCGAATTGGCTTCCCATCCACCAGTCCAGCCAAGGCCAAGAAGACCAAACGCATGGCCATGGGTGTCTCCGCTTTGACCCACAGCCCCAGCAGCTCTTCCATTAGCTCTGTCAGCTCTGTGGCCTCCTCTGTTGGTGGCCGGCCCAGCCGCAGTGGCCTG
Seq A exon
CTCACAGAGACCTCTTCGCGCTATGCCCGGAAGATCTCAGGCACCACAGCTCTGCAGGAGGCCCTGAAGGAGAAGCAGCAGCACATTGAACAGCTGCTGGCTGAGCGCGACTTGGAGAGAGCCGAAGTAGCCAAGGCTACCAGCCATATCTGTGAGGTGGAGAAGGAGATCGCCCTGCTGAAGGCACAGCATGAGCAG
Seq C2 exon
TATGTTGCAGAAGCCGAGGAGAAGCTGCAGCGGGCACGGTTGCTGGTGGAAAACGTGAGGAAAGAGAAGGTGGATCTGTCCAATCAGCTGGAGGAGGAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063146-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=0.106 C2=0.086
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=PD(27.3=25.0),PF116003=CAF-1_p150=PU(23.2=61.1)
A:
PF116003=CAF-1_p150=FE(34.2=100)
C2:
PF116003=CAF-1_p150=FE(17.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCTCTTTGCACCAATCCA
R:
TTCCTCACGTTTTCCACCAGC
Band lengths:
252-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: