HsaEX6008467 @ hg19
Exon Skipping
Gene
ENSG00000106665 | CLIP2
Description
CAP-GLY domain containing linker protein 2 [Source:HGNC Symbol;Acc:2586]
Coordinates
chr7:73770740-73774608:+
Coord C1 exon
chr7:73770740-73770953
Coord A exon
chr7:73771610-73771807
Coord C2 exon
chr7:73774505-73774608
Length
198 bp
Sequences
Splice sites
3' ss Seq
GCATCCACACCTTCCTGCAGCTC
3' ss Score
6.44
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTACTTCCAGTGCCCACCCAAGTTTGGTCTCTTCGCGCCCATCCACAAAGTGATCCGTATCGGCTTCCCATCTACCAGCCCAGCCAAGGCCAAGAAGACCAAGCGTATGGCCATGGGTGTGTCAGCACTGACCCACAGTCCCAGCAGTTCCTCCATCAGCTCCGTCAGCTCTGTGGCCTCCTCCGTGGGGGGTCGGCCCAGCCGCAGTGGCCTG
Seq A exon
CTCACGGAGACCTCTTCACGCTACGCCCGCAAGATCTCGGGCACCACGGCCTTGCAGGAGGCACTGAAGGAGAAGCAGCAGCACATTGAGCAGCTGCTGGCTGAACGAGACCTGGAACGGGCTGAGGTGGCCAAGGCCACAAGCCACATCTGCGAGGTGGAGAAGGAGATTGCCCTGCTCAAGGCACAGCATGAGCAG
Seq C2 exon
TATGTTGCAGAAGCCGAGGAGAAGCTGCAGCGAGCCCGGCTGCTCGTGGAGAGCGTGCGGAAAGAGAAGGTGGACCTGTCCAACCAGCTGGAGGAGGAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106665-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=0.106 C2=0.023
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=PD(27.3=25.0),PF116003=CAF-1_p150=PU(23.3=61.1)
A:
PF116003=CAF-1_p150=FE(34.4=100)
C2:
PF116003=CAF-1_p150=FE(18.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCATCCACAAAGTGATCCG
R:
GTCCACCTTCTCTTTCCGCAC
Band lengths:
253-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)