BtaEX6110182 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011875 | CLIP2
Description
CAP-GLY domain containing linker protein 2 [Source:HGNC Symbol;Acc:HGNC:2586]
Coordinates
chr25:33593829-33596501:-
Coord C1 exon
chr25:33596288-33596501
Coord A exon
chr25:33595061-33595258
Coord C2 exon
chr25:33593829-33593932
Length
198 bp
Sequences
Splice sites
3' ss Seq
GCTCCGGCACCTCCCTGCAGCTC
3' ss Score
7.12
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTACTTCCAGTGCCCACCCAAGTTTGGTCTCTTTGCACCCATCCACAAGGTGATCCGCATCGGCTTCCCATCCACCAGCCCAGCCAAGGCCAAGAAGACCAAGCGTATGGCCATGGGTGTGTCGGCGCTGACCCACAGTCCCAGCAGCTCCTCCATCAGCTCTGTCAGCTCTGTGGCCTCCTCCGTGGGTGGCCGGCCCAGCCGCAGTGGCCTG
Seq A exon
CTCACCGAGACCTCCTCGCGCTACGCCCGCAAGATCTCAGGCACCACGGCCTTGCAGGAGGCGCTGAAGGAGAAGCAGCAGCACATAGAGCAGCTGCTGGCTGAACGGGACCTGGAGCGGGCTGAGGTGGCCAAGGCCACGAGCCACATCTGCGAGGTGGAGAAGGAGATCGCCCTGCTCAAGGCACAGCACGAGCAG
Seq C2 exon
TATGTTGCAGAAGCAGAAGAAAAGCTGCAGCGGGCCCGGCTCCTGGTGGAAAGCGTGAGGAAAGAGAAGGTGGACCTGTCCAACCAGCTGGAGGAGGAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011875-'4-8,'4-7,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=0.106 C2=0.000
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=PD(27.3=25.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGCACCCATCCACAAGGT
R:
CCACCTTCTCTTTCCTCACGC
Band lengths:
257-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]