RnoEX0021802 @ rn6
Exon Skipping
Gene
ENSRNOG00000021611 | Clip2
Description
CAP-GLY domain containing linker protein 2 [Source:RGD Symbol;Acc:62019]
Coordinates
chr12:25208149-25210634:+
Coord C1 exon
chr12:25208149-25208362
Coord A exon
chr12:25208853-25209050
Coord C2 exon
chr12:25210531-25210634
Length
198 bp
Sequences
Splice sites
3' ss Seq
CCCATGCCCACTTTCTACAGCTC
3' ss Score
8.04
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTACTTCCAGTGCCCACCCAAGTTCGGTCTCTTTGCACCAATCCACAAGGTCATCCGAATTGGCTTCCCATCTACCAGTCCAGCCAAGGCCAAGAAGACCAAGCGCATGGCTATGGGTGTCTCAGCCTTGACCCACAGCCCCAGCAGTTCTTCCATCAGCTCTGTCAGCTCTGTGGCCTCCTCTGTTGGTGGCCGGCCGAGCCGTAGTGGCCTG
Seq A exon
CTCACAGAGACCTCTTCACGCTATGCCCGGAAGATCTCAGGCACCACAGCCCTGCAGGAGGCACTGAAGGAGAAACAGCAGCACATCGAACAGCTGCTGGCTGAGCGTGACTTGGAGAGGGCAGAAGTAGCCAAGGCTACCAGTCATATCTGTGAGGTGGAGAAGGAAATTGCCCTGCTGAAGGCACAGCATGAGCAG
Seq C2 exon
TATGTTGCAGAAGCTGAGGAGAAGCTGCAGCGGGCACGGTTGCTGGTGGAAAACGTGAGGAAGGAGAAGGTGGATCTGTCCAATCAGCTGGAGGAGGAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021611-'10-8,'10-7,11-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=0.106 C2=0.000
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=PD(27.3=25.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCTCTTTGCACCAATCCA
R:
TTCCTCACGTTTTCCACCAGC
Band lengths:
252-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]