HsaEX6008467 @ hg38
Exon Skipping
Gene
ENSG00000106665 | CLIP2
Description
CAP-Gly domain containing linker protein 2 [Source:HGNC Symbol;Acc:HGNC:2586]
Coordinates
chr7:74356410-74360278:+
Coord C1 exon
chr7:74356410-74356623
Coord A exon
chr7:74357280-74357477
Coord C2 exon
chr7:74360175-74360278
Length
198 bp
Sequences
Splice sites
3' ss Seq
GCATCCACACCTTCCTGCAGCTC
3' ss Score
6.44
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTACTTCCAGTGCCCACCCAAGTTTGGTCTCTTCGCGCCCATCCACAAAGTGATCCGTATCGGCTTCCCATCTACCAGCCCAGCCAAGGCCAAGAAGACCAAGCGTATGGCCATGGGTGTGTCAGCACTGACCCACAGTCCCAGCAGTTCCTCCATCAGCTCCGTCAGCTCTGTGGCCTCCTCCGTGGGGGGTCGGCCCAGCCGCAGTGGCCTG
Seq A exon
CTCACGGAGACCTCTTCACGCTACGCCCGCAAGATCTCGGGCACCACGGCCTTGCAGGAGGCACTGAAGGAGAAGCAGCAGCACATTGAGCAGCTGCTGGCTGAACGAGACCTGGAACGGGCTGAGGTGGCCAAGGCCACAAGCCACATCTGCGAGGTGGAGAAGGAGATTGCCCTGCTCAAGGCACAGCATGAGCAG
Seq C2 exon
TATGTTGCAGAAGCCGAGGAGAAGCTGCAGCGAGCCCGGCTGCTCGTGGAGAGCGTGCGGAAAGAGAAGGTGGACCTGTCCAACCAGCTGGAGGAGGAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106665_MULTIEX2-4/4=3-C2
Average complexity
S
Mappability confidence:
86%=86=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=0.106 C2=0.019
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=PD(27.3=25.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCATCCACAAAGTGATCCG
R:
GTCCACCTTCTCTTTCCGCAC
Band lengths:
253-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains