DreEX0022129 @ danRer10
Exon Skipping
Gene
ENSDARG00000059596 | clip2
Description
CAP-GLY domain containing linker protein 2 [Source:ZFIN;Acc:ZDB-GENE-100727-3]
Coordinates
chr5:58774793-58795691:+
Coord C1 exon
chr5:58774793-58775001
Coord A exon
chr5:58779957-58780154
Coord C2 exon
chr5:58795634-58795691
Length
198 bp
Sequences
Splice sites
3' ss Seq
TTTGACTTTATTACTAATAGTTG
3' ss Score
4.04
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
ATATTTCCAGTGCCCACCCAAGTTTGGCCTCTTTGCTCCAATCCACAAGGTGATTCGCATCGGCTTCCCGTCCACCAGTCCAGCTAAAGCTAAGAAGAGCAAGCGTATGGCGATGGGTGTGTCGTCTCTGGCCCACAGCCCCTCCAGTTCCTCCATCAGCTCTGTCAGCTCTGTGGCGTCCAGCGTTGGAGGCCGTCCCAGCCGCACAG
Seq A exon
TTGACAGAGACGTCATCGAGGTATGCGCGGAAGATCTCGGGAACCACGGCTTTGCAGGAAGCCCTGAAGGAGAAACAGCAGCACATCGAGCAGCTCCTGGCCGAGAGAGACCTGGAGCGGGCTGAAGTCGCGAAGGCCACCAGCCATATCTGCGAGGTGGAAAAGGAGCTGGCGGCGCTGAAGGCGCGACATCTGCAG
Seq C2 exon
ATGATTGAAAATAACGACAACTCTGACGAAAAGGTTAAACTAAAACAAAATGTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059596_MULTIEX1-1/9=C1-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.415 A=0.239 C2=0.950
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=PD(27.3=25.0),PF041569=IncA=PU(22.0=48.6)
A:
PF041569=IncA=FE(40.9=100)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATTTCCAGTGCCCACCCAAG
R:
ACCTTTTCGTCAGAGTTGTCGT
Band lengths:
243-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]