GgaEX6020701 @ galGal3
Exon Skipping
Gene
ENSGALG00000013079 | F1NT47_CHICK
Description
NA
Coordinates
chr2:82313344-82317521:+
Coord C1 exon
chr2:82313344-82313530
Coord A exon
chr2:82315171-82315389
Coord C2 exon
chr2:82317325-82317521
Length
219 bp
Sequences
Splice sites
3' ss Seq
CTTTCATTTTCTTGCATCAGATC
3' ss Score
8.29
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ACTTAGCACCTCCAGGCTGGAAAGGCACTTGCACAGAAAGAGCCACAAGTGGTGTTGTGTTGCTGTCTCTCACCAAAGAGCACATGGATAACCATAAGGCTGCTGTTAAAGACCTCTGTCTCACTTTCCATAAAGGTCAAATAACAGCACTCTTGGGACCTAATGGAGCTGGCAAAACAACAGTTAT
Seq A exon
ATCACTGTTGACTGGTCTGTACCCACCTAGCTCTGGTACCATTCTTATCAATGGAAAGGACATACGAACTGATCTGGCTGCCATCAGGACAGAGCTGGGTGTTTGCCCACAGTATGATGTTCTGTTCAACATACTAACAGTACGAGAACATCTGCTCCTTTATGGATCAGTGAAGGCACCTGGCTGGACAAATGAACAGTTGAATCAGCAAGTCAGTGG
Seq C2 exon
AGCTCTGGAAGATGTGGATTTATCCCAACACCAGTACAAACCTGTTGGGGCCCTTTCTGGGGGAATGAAAAGGAGACTGTCAATTGCCATTTCCTTTATTGGAAACTCAAAGACTGTTGTTCTAGATGAGCCTACCAGTGGAGTAGATCCATGTTCCCGCCGTAGCATTTGGGACATTCTACTGAAGTACAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013079-'20-21,'20-20,21-21=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.4=42.9)
A:
PF0000522=ABC_tran=FE(49.7=100)
C2:
PF0000522=ABC_tran=PD(31.3=68.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGTGTTGTGTTGCTGTCT
R:
TACGGCGGGAACATGGATCTA
Band lengths:
304-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]