BtaEX6026058 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003531 | ABCA13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
Coordinates
chr4:7332947-7339975:-
Coord C1 exon
chr4:7339795-7339975
Coord A exon
chr4:7337210-7337428
Coord C2 exon
chr4:7332947-7333143
Length
219 bp
Sequences
Splice sites
3' ss Seq
CTGACGTGTCTTCTCTGCAGATC
3' ss Score
11.55
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCTCATCCCTGCAAAACGGGAAAGGAGAGCTGGAAGGAGGCTCCCCCGGCGTTGTCCTGCTTTCCGTGACCAAGGAGCATGATCGCCACAAGGCGGGGGTCTGGGACCTGACCCTGACCTTCCACAGGGACCAGATCACTGCGCTGCTGGGGACCAACGGGGCTGGGAAGACCACCGTCAT
Seq A exon
ATCCCTGCTCACAGGACTCTACCCTCCCACGTCCGGGACCATCACCGTCAATGGCAGGAGCCTGCAGAAGGACCCGTCTGTGGTCAGGGCGGAGCTGGGGGTGTGTCTGCAGTGGGATATCCTGTTCGACCGCCTCACGGTGCTTGAGCACCTGATGCTCTTTGCCTCCCTGAAGGCACTGCGGGGGACTCGCCAGGAGCTGCGTGAGCAAGTCCACAG
Seq C2 exon
AACTCTTCAGGATGTGGGGCTGACGCCACACCAGCACCAACAGGCTCGAGTGCTCTCGGGAGGCACGCGAAGAAAGCTGTCCATTGGCATCGCCTTCCTGGGCGCGTCGGGGACCGTGGTCTTAGATGAACCCACCAGCGGGGTGGACCCGTGCTCCCGCCGTGGCATCTGGGACATCCTCCTCAAGTACCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003531-'45-45,'45-44,46-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.068 C2=0.164
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.4=44.3)
A:
PF0000522=ABC_tran=FE(49.7=100)
C2:
PF0000522=ABC_tran=PD(31.3=68.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAACGGGAAAGGAGAGCT
R:
TCATCTAAGACCACGGTCCCC
Band lengths:
300-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]