RnoEX6043338 @ rn6
Exon Skipping
Gene
ENSRNOG00000025645 | Abca13
Description
ATP binding cassette subfamily A member 13 [Source:RGD Symbol;Acc:1305895]
Coordinates
chr14:89619349-89630036:+
Coord C1 exon
chr14:89619349-89619529
Coord A exon
chr14:89621517-89621735
Coord C2 exon
chr14:89629840-89630036
Length
219 bp
Sequences
Splice sites
3' ss Seq
CTGATCTTTGTTCTCTGTAGATC
3' ss Score
10.79
5' ss Seq
CAAGTTAGT
5' ss Score
4.22
Exon sequences
Seq C1 exon
GGCTCTCACAGCAAAATGGCCCAGGAGAGATGGAAGGAGGGAGCCCAGGAGTGGCTCTGATATCTGTGACCAAGGAGTATGAAGACCACAAGGTGGCTGTCCAGGAACTCACTCTCACCTTCCACAGAGACCAGATCACAGCCCTGCTGGGGACCAATGGCGCAGGGAAAACCACCATCAT
Seq A exon
ATCCATGTTGATGGGCCTCTTTCCTCCTACTTCTGGAACCATCATCGTAAATGGCAAGAACCTGCAGACAGACTTCTCTAAGGTCAGAGAGGAGCTGGGGGTGTGTCCACAGCACGATGTTCTCCTGGACAATCTCACTGTGAGGGAGCACCTAATGCTCTTTGCCTCCATAAAAGCACCTTGGTGGACCAACAAGGAGCTACGGCAGCAAGTCAACAA
Seq C2 exon
AACTCTTGAAGAAGTAGAGCTAACTCAGCATCAGCACAAGCCAGCTCGAGTTCTCTCTGGAGGCATGAAGAGGAAACTCTCCATTGGCATTGCTTTCATGGGCATGTCAAAGACAGTGGTTCTGGATGAGCCAAGCAGTGGGGTGGACCCTTGTTCCCGTCGTAGCCTCTGGAACATTCTACTCAAGTACCGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025645-'42-40,'42-39,43-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=0.014 C2=0.104
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.4=44.3)
A:
PF0000522=ABC_tran=FE(49.7=100)
C2:
PF0000522=ABC_tran=PD(31.3=68.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCACAGCAAAATGGCCCAG
R:
ACCACTGTCTTTGACATGCCC
Band lengths:
298-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]