GgaEX6020701 @ galGal4
Exon Skipping
Gene
ENSGALG00000013079 | ABCA13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
Coordinates
chr2:79991698-79995860:+
Coord C1 exon
chr2:79991698-79991869
Coord A exon
chr2:79993510-79993728
Coord C2 exon
chr2:79995664-79995860
Length
219 bp
Sequences
Splice sites
3' ss Seq
CTTTCATTTTCTTGCATCAGATC
3' ss Score
8.29
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GCTGGAAAGGCACTTGCACAGAAAGAGCCACAAGTGGTGTTGTGTTGCTGTCTCTCACCAAAGAGCACATGGATAACCATAAGGCTGCTGTTAAAGACCTCTGTCTCACTTTCCATAAAGGTCAAATAACAGCACTCTTGGGACCTAATGGAGCTGGCAAAACAACAGTTAT
Seq A exon
ATCACTGTTGACTGGTCTGTACCCACCTAGCTCTGGTACCATTCTTATCAATGGAAAGGACATACGAACTGATCTGGCTGCCATCAGGACAGAGCTGGGTGTTTGCCCACAGTATGATGTTCTGTTCAACATACTAACAGTACGAGAACATCTGCTCCTTTATGGATCAGTGAAGGCACCTGGCTGGACAAATGAACAGTTGAATCAGCAAGTCAGTGG
Seq C2 exon
AGCTCTGGAAGATGTGGATTTATCCCAACACCAGTACAAACCTGTTGGGGCCCTTTCTGGGGGAATGAAAAGGAGACTGTCAATTGCCATTTCCTTTATTGGAAACTCAAAGACTGTTGTTCTAGATGAGCCTACCAGTGGAGTAGATCCATGTTCCCGCCGTAGCATTTGGGACATTCTACTGAAGTACAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013079-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.4=46.6)
A:
PF0000522=ABC_tran=FE(49.7=100)
C2:
PF0000522=ABC_tran=PD(31.3=68.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGTGTTGTGTTGCTGTCT
R:
TACGGCGGGAACATGGATCTA
Band lengths:
304-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]