HsaEX6008208 @ hg19
Exon Skipping
Gene
ENSG00000179869 | ABCA13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:HGNC Symbol;Acc:14638]
Coordinates
chr7:48428637-48443476:+
Coord C1 exon
chr7:48428637-48428817
Coord A exon
chr7:48431518-48431736
Coord C2 exon
chr7:48443280-48443476
Length
219 bp
Sequences
Splice sites
3' ss Seq
TGTCTTATTTTCTCTGGCAGATC
3' ss Score
11.39
5' ss Seq
TCAGTTAGT
5' ss Score
-0.03
Exon sequences
Seq C1 exon
GGTCATCACTGCAAAACAGGGAAGGAGAGCTTGAAGGAAGTGCCCCGGGAGTCACCCTGGTGTCTGTGACCAAGGAATATGAGGGCCACAAGGCTGTGGTCCAAGACCTCAGCCTGACCTTCTACAGAGACCAAATCACCGCCCTGCTGGGGACAAACGGTGCCGGGAAAACCACTATCAT
Seq A exon
ATCCATGTTGACGGGGCTCCACCCTCCCACTTCTGGAACCATCATCATCAATGGCAAGAACCTACAGACAGACCTGTCGAGGGTCAGAATGGAGCTTGGTGTGTGTCCGCAGCAGGACATCCTGTTGGACAACCTCACCGTCCGGGAACATTTGCTGCTCTTTGCTTCCATAAAGGCGCCTCAGTGGACCAAGAAGGAGCTGCATCAGCAAGTCAATCA
Seq C2 exon
AACTCTTCAGGATGTGGACTTAACTCAGCATCAGCACAAACAGACCCGAGCTCTGTCTGGAGGCCTGAAGAGGAAGCTCTCCCTTGGCATTGCTTTCATGGGCATGTCGAGGACCGTGGTTCTGGATGAGCCCACCAGTGGGGTGGACCCTTGCTCCCGGCATAGCCTGTGGGACATTCTGCTCAAGTACCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179869-'39-39,'39-38,40-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.4=44.3)
A:
PF0000522=ABC_tran=FE(49.7=100)
C2:
PF0000522=ABC_tran=PD(31.3=68.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAAACAGGGAAGGAGAGC
R:
TCATCCAGAACCACGGTCCTC
Band lengths:
301-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)