MmuEX6084018 @ mm10
Exon Skipping
Gene
ENSMUSG00000004668 | Abca13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:MGI Symbol;Acc:MGI:2388707]
Coordinates
chr11:9431727-9451535:+
Coord C1 exon
chr11:9431727-9431907
Coord A exon
chr11:9434108-9434326
Coord C2 exon
chr11:9451339-9451535
Length
219 bp
Sequences
Splice sites
3' ss Seq
CTGATTGTTGTTCTTTGTAGATC
3' ss Score
9.61
5' ss Seq
CAAGTTAGT
5' ss Score
4.22
Exon sequences
Seq C1 exon
GGCTCTCACAGCAAAATGGCCCAGGAGAAATGGAAGGAGGTAACCCAGGAGTGGCTCTGATATCTGTGACCAAGGAGTATGAAGATCACAAGGTGGCTGTCCAGGAACTCACTCTCACCTTCCACAGAGACCAGATCACAGCCCTGCTGGGGACCAACGGTGCAGGGAAAACCACCATCAT
Seq A exon
ATCCATGTTGATGGGGCTCTTTCCTCCTACTTCTGGAACCATCACCATAAATGGCAAGAATCTGCAGACAGATTTGTCCAAGGTCAGAGAGGAGCTGGGGGTGTGTCCACAGCAGGATGTTCTCCTGGACAACCTCACTGTGCGTGAACACCTAATGCTCTTTGCCTCCATAAAAGCACCTTGGTGGACCACGAAGGAGCTACAGCAGCAAGTCAACAA
Seq C2 exon
AACTCTTGATGAAGTAGAGCTAACTCAGCATCAGCACAAGCCAGCTGGAGTTCTCTCTGGAGGCATGAAGAGGAAGCTCTCCATTGGCATTGCTTTCATGGGCATGTCAAAGACAGTGGTTCTGGATGAGCCAAGCAGTGGGGTGGACCCTTGTTCCCGTCGCAGTCTCTGGGACATTCTACTCAAGTACCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004668-'53-47,'53-46,54-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=0.014 C2=0.134
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.4=44.3)
A:
PF0000522=ABC_tran=FE(49.7=100)
C2:
PF0000522=ABC_tran=PD(31.3=68.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCACAGCAAAATGGCCCAG
R:
ACCACTGTCTTTGACATGCCC
Band lengths:
298-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types