GgaEX6040742 @ galGal3
Exon Skipping
Gene
ENSGALG00000007622 | Q8QGG9_CHICK
Description
NA
Coordinates
chr6:23832952-23833470:+
Coord C1 exon
chr6:23832952-23833095
Coord A exon
chr6:23833196-23833359
Coord C2 exon
chr6:23833447-23833470
Length
164 bp
Sequences
Splice sites
3' ss Seq
ACCCGCTATCCTCAACGCAGGCA
3' ss Score
7.1
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
Exon sequences
Seq C1 exon
GCTCCTCAATGCCAACAAGATCAACTGCGTGCGTGCAGATGCCTTCCAGGACCTGCAGAACCTCTCGCTGCTCTCGCTGTATGACAACAAGATCCAGAGCCTGGCCAAGGGCACCTTCACCTCACTGCGTGCCATCCAGACCCT
Seq A exon
GCACCTGGCCCAGAACCCCTTTGTCTGTGACTGCAACCTGAAGTGGTTGGCGGATTTCCTTCGTGCCAACCCCATTGAGACCAGCGGTGCCCGCTGTGCCAGCCCCCGGCGCCTGGCCAACAAGCGCATTGGGCAGATCAAGAGCAAGAAGTTCCGCTGCTCGG
Seq C2 exon
CCAAAGAGCAGTATTTCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007622-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(12.7=14.3),PF127992=LRR_4=PU(60.4=59.2)
A:
PF127992=LRR_4=PD(37.5=32.1)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTCAATGCCAACAAGAT
R:
TGGGATGAAATACTGCTCTTTGG
Band lengths:
167-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]