RnoEX0083440 @ rn6
Exon Skipping
Gene
ENSRNOG00000026065 | Slit1
Description
slit guidance ligand 1 [Source:RGD Symbol;Acc:69307]
Coordinates
chr1:260883686-260893972:-
Coord C1 exon
chr1:260893829-260893972
Coord A exon
chr1:260884353-260884516
Coord C2 exon
chr1:260883686-260883709
Length
164 bp
Sequences
Splice sites
3' ss Seq
CCATTTCTTCCTTTGGACAGGCA
3' ss Score
7.42
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCTTCTGAATGCCAACAAGATCAACTGCATCCGGCCTGATGCCTTCCAGGACCTGCAGAACCTCTCTCTGCTCTCCCTATATGACAACAAGATCCAGAGTCTCGCCAAGGGCACCTTCACCTCCCTGCGGGCCATCCAGACACT
Seq A exon
GCATCTGGCCCAGAACCCTTTCATCTGTGACTGTAACCTCAAGTGGCTAGCAGACTTCTTACGTACCAACCCCATTGAGACAACTGGGGCCCGCTGTGCCAGCCCCCGGCGCCTTGCCAACAAGCGTATCGGGCAGATCAAAAGCAAGAAGTTCCGGTGCTCAG
Seq C2 exon
CCAAAGAGCAGTACTTCATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026065-'19-15,'19-14,21-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=14.3),PF127992=LRR_4=PU(60.4=59.2)
A:
PF127992=LRR_4=PD(37.5=32.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGCCAACAAGATCAACTGC
R:
TGGAATGAAGTACTGCTCTTTGG
Band lengths:
162-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]