DreEX6059543 @ danRer10
Exon Skipping
Gene
ENSDARG00000044954 | slit1a
Description
slit homolog 1a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030722-3]
Coordinates
chr13:452088-455752:-
Coord C1 exon
chr13:455609-455752
Coord A exon
chr13:453670-453833
Coord C2 exon
chr13:452088-452111
Length
164 bp
Sequences
Splice sites
3' ss Seq
TTGATCTTCTCGTCTCTCAGTCA
3' ss Score
7.77
5' ss Seq
CCGGTAAAG
5' ss Score
6.84
Exon sequences
Seq C1 exon
TCTTTTGAATGCAAATAAGATCCACTGTCTTCGAGCAAACACCTTCCAGGACCTGCAGAATCTCTCTCTGCTTTCTTTATACGACAACAAGATCCAGACGCTGGCCAAAGGCACCTTTAGCTCGCTGCGGGCCATACAGACACT
Seq A exon
TCATCTGGCTCAGAATCCCTTCATCTGTGACTGTAACCTGAAGTGGTTGGCAGATTACCTGCGCTCCAACCCCATCGAGACCAGCGGAGCGCGATGCACCAGCCCTCGACGCCTCGCCAACAAACGCATCGGCCAGATCAAGAGCAAGAAGTTCCGCTGCTCCG
Seq C2 exon
CTAAAGAGCAGTACGTCATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044954-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=14.3),PF127992=LRR_4=PU(51.7=61.2)
A:
PF127992=LRR_4=PD(46.6=48.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGCAAATAAGATCCACTGTCT
R:
CTGGAATGACGTACTGCTCTT
Band lengths:
163-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]