MmuEX6032836 @ mm9
Exon Skipping
Gene
ENSMUSG00000025020 | Slit1
Description
slit homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315203]
Coordinates
chr19:41713373-41720649:-
Coord C1 exon
chr19:41720506-41720649
Coord A exon
chr19:41714193-41714356
Coord C2 exon
chr19:41713373-41713396
Length
164 bp
Sequences
Splice sites
3' ss Seq
CCATTTGTTCCTTTGGACAGGCA
3' ss Score
7.81
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCTTCTAAATGCCAACAAGATCAACTGCATCCGGCCTGATGCCTTCCAGGACCTGCAGAACCTCTCTCTGCTCTCCCTGTATGACAACAAGATCCAGAGTCTCGCCAAGGGCACCTTCACCTCCCTACGGGCCATCCAGACACT
Seq A exon
GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG
Seq C2 exon
CCAAAGAGCAGTACTTCATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025020-'17-14,'17-13,18-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=14.3),PF127992=LRR_4=PU(60.4=59.2)
A:
PF127992=LRR_4=PD(37.5=32.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGCCAACAAGATCAACTGCA
R:
CTGGAATGAAGTACTGCTCTTTGG
Band lengths:
162-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: