MmuEX6032836 @ mm10
Exon Skipping
Gene
ENSMUSG00000025020 | Slit1
Description
slit homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315203]
Coordinates
chr19:41638883-41646159:-
Coord C1 exon
chr19:41646016-41646159
Coord A exon
chr19:41639703-41639866
Coord C2 exon
chr19:41638883-41638906
Length
164 bp
Sequences
Splice sites
3' ss Seq
CCATTTGTTCCTTTGGACAGGCA
3' ss Score
7.81
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCTTCTAAATGCCAACAAGATCAACTGCATCCGGCCTGATGCCTTCCAGGACCTGCAGAACCTCTCTCTGCTCTCCCTGTATGACAACAAGATCCAGAGTCTCGCCAAGGGCACCTTCACCTCCCTACGGGCCATCCAGACACT
Seq A exon
GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG
Seq C2 exon
CCAAAGAGCAGTACTTCATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025020-'16-21,'16-20,17-21
Average complexity
S
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=14.3),PF127992=LRR_4=PU(60.4=59.2)
A:
PF127992=LRR_4=PD(37.5=32.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGCCAACAAGATCAACTGCA
R:
CTGGAATGAAGTACTGCTCTTTGG
Band lengths:
162-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types