HsaEX6089771 @ hg19
Exon Skipping
Gene
ENSG00000187122 | SLIT1
Description
slit homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:11085]
Coordinates
chr10:98807730-98816221:-
Coord C1 exon
chr10:98816078-98816221
Coord A exon
chr10:98808712-98808875
Coord C2 exon
chr10:98807730-98807753
Length
164 bp
Sequences
Splice sites
3' ss Seq
GATCTGCCTGCTTTGGACAGGCA
3' ss Score
5.8
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GCTCCTGAATGCCAACAAGATCAACTGCATCCGGCCCGATGCCTTCCAGGACCTGCAGAACCTCTCACTGCTCTCCCTGTATGACAACAAGATCCAGAGCCTCGCCAAGGGCACTTTCACCTCCCTGCGGGCCATCCAGACTCT
Seq A exon
GCACCTGGCGCAGAACCCTTTCATTTGCGACTGTAACCTCAAGTGGCTGGCAGACTTCCTGCGCACCAATCCCATCGAGACGAGTGGTGCCCGCTGTGCCAGTCCCCGGCGCCTCGCCAACAAGCGCATCGGGCAGATCAAGAGCAAGAAGTTCCGGTGCTCAG
Seq C2 exon
CCAAAGAGCAGTACTTCATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187122-'20-22,'20-21,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=14.3),PF127992=LRR_4=PU(60.4=59.2)
A:
PF127992=LRR_4=PD(37.5=32.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTGAATGCCAACAAGAT
R:
TGGAATGAAGTACTGCTCTTTGG
Band lengths:
167-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)