BtaEX6099999 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000043991 | SLIT1
Description
slit homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11085]
Coordinates
chr26:18180506-18187968:-
Coord C1 exon
chr26:18187825-18187968
Coord A exon
chr26:18181133-18181296
Coord C2 exon
chr26:18180506-18180529
Length
164 bp
Sequences
Splice sites
3' ss Seq
AATCTGCCCCCTCTGGACAGGCA
3' ss Score
8.13
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
GCTCCTGAATGCCAACAAGATCAACTGCATCCGGCTCGACGCCTTCCAGGATCTGCAGAACCTCTCACTGCTCTCCCTGTATGACAACAAGATCCAGAGTCTTGCTAAGGGCACCTTCACCTCCCTGCGGGCCATCCAGACCCT
Seq A exon
GCATCTGGCCCAGAACCCCTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCCTGCGCTCCAACCCCATCGAGACCAGTGGGGCCCGCTGTGCCAGCCCCCGACGCCTTGCCAACAAGCGCATCGGCCAGATCAAAAGCAAGAAGTTCCGGTGCTCAG
Seq C2 exon
CCAAAGAGCAGTACTTCATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043991-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=14.3),PF127992=LRR_4=PU(52.6=61.2)
A:
PF127992=LRR_4=PD(45.6=46.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTGAATGCCAACAAGAT
R:
TGGAATGAAGTACTGCTCTTTGG
Band lengths:
167-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]