GgaEX6042483 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:20856730-20860714:-
Coord C1 exon
chr7:20860642-20860714
Coord A exon
chr7:20859838-20859971
Coord C2 exon
chr7:20856730-20856863
Length
134 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTCTTCCATTGCAGTAA
3' ss Score
9.31
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTTTCTCTTGGGGAGCAAGGAACACCTGAGACAAACCAGGCTTCTACATTTACACAGAGCACTGATGAAACAG
Seq A exon
TAACCAGTGCAGTTATGAATGAGGACTTCCCAAAAACTTCTACACAGATTTTAAAACAGCATTTTGAAATGACAGCTCAGGAAAACACTGTACCCTCTGACAGAGAGACTGCAACACCTGCAAAAAATGTACAG
Seq C2 exon
AAACTACTGTTTCAGGAAAATGAAATATGCACACTCTGTCAGCAGAGAGTTTATCCAATGGAACGCCTAGTCGCCGACAAGCAAAGTTTTCATAAATCATGTTTCCGATGTCACCACTGTGGCAGTCAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010933-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.867 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0041217=LIM=PU(61.4=77.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTTGGGGAGCAAGGAACA
R:
TAATTGACTGCCACAGTGGTG
Band lengths:
202-336
Functional annotations
There are 1 annotated functions for this event
PMID: 17875928
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: classical fluorescence spectroscopy, detection by mass spectrometry, mutation analysis, protein kinase assay, western blot. ELM ID: ELMI001447; ELM sequence: KPLSPDA; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]