BtaEX6009321 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017743 | XIRP2
Description
xin actin-binding repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:14303]
Coordinates
chr2:29092922-29099979:-
Coord C1 exon
chr2:29099907-29099979
Coord A exon
chr2:29098839-29098969
Coord C2 exon
chr2:29092922-29098175
Length
131 bp
Sequences
Splice sites
3' ss Seq
GTGTTCTTTTGTGTTTATAGTCA
3' ss Score
7.74
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTCTCTCATCTTGAAAAACACACTGAGGAAATAAACCAAGCTTCTAAGCTCCATCAATATGTTCAAGAAACAG
Seq A exon
TCATAGATACACCTGAAGATGAAGAGATTCCAAAGGTTTCGACTAAGTTTTTAAAAGAACAATTTGAAAAGTCTGTCCAGGAAAAGGTCCTTTATTCTGACAAAGAATTGACCCCAGCCAAGCAGATTAAG
Seq C2 exon
ATGGAAAGTGAATCTGAAGAGACTTTAAAGCCATCATCAATTGTGGGTACCTCTTCTACTTCTTACACTTCAACCAGCCAGAGGAAGGAAACATCAACCACCAGATACAGTGACCACAGTGCCACTTCCTCAACTCTGGCACAAATTAATGCCACTCCTTCGGAAAAGACAGAAGAATTTCCTCCTCCCCCTCCCGACATGCTTCAACCTCCAGTAGATGTGACAGCATTTTCCCAGTCCCCTGAACTCCCCAACCCTCCTAGAAAACCACCAGTCCCTAAAGAATTATACTCCAAGCAAAGAAATTTGTATGAATTAAACCGTTTATATAAACACATCCATCCTGAGTTAAGGAAAAACTTAGAAAAAGATTATATCAGTGAGGTTTCTGAGATTGTTTCTCGTCAAATGAATGCGGGGAGCTCAGTTTCAGCAGATGTGCAACAAGCCCGGTATGTTTTTGAAAATACGAATGACAGTTCTCAAAAAGGTCTGAACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017743-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.773 C2=0.277
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACACACTGAGGAAATAAACCAAGCT
R:
GGAGGGGGAGGAGGAAATTCT
Band lengths:
250-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]