HsaEX6016447 @ hg19
Exon Skipping
Gene
ENSG00000163092 | XIRP2
Description
xin actin-binding repeat containing 2 [Source:HGNC Symbol;Acc:14303]
Coordinates
chr2:168097174-168110675:+
Coord C1 exon
chr2:168097174-168097246
Coord A exon
chr2:168098287-168098420
Coord C2 exon
chr2:168110542-168110675
Length
134 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTTTTCTGTTTGTAGTCA
3' ss Score
7.78
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTCTCTCATCTTGAAAAGCACACCGAGGAAGTAAACCAAGCATCTCAGTTTCATCAATATGTTCAAGAAACTG
Seq A exon
TCATTGATACACCTGAGGATGAAGAGATTCCAAAGGTTTCGACTAAGTTGTTAAAAGAGCAGTTTGAAAAGTCTGCCCAGGAAAAGATCCTTTATTCTGACAAAGAGATGACAACCCCAGCCAAGCAGATTAAG
Seq C2 exon
AAGCTGCTGCTCCAAGACAAGGAAATATGTATACTTTGTCAAAAGACAGTTTATCCAATGGAGTGCCTAGTGGCAGACAAGCAGAATTTTCATAAGTCCTGCTTCCGATGCCACCATTGCAACAGTAAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163092-'10-14,'10-12,11-14=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.782 A=0.543 C2=0.236
Domain overlap (PFAM):
C1:
PF0231811=FYVE_2=PU(15.7=72.0)
A:
PF0231811=FYVE_2=FE(38.3=100)
C2:
PF0231811=FYVE_2=FE(38.3=100),PF0041217=LIM=PU(61.4=77.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCATCTTGAAAAGCACACCG
R:
AGTTTACTGTTGCAATGGTGGC
Band lengths:
202-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)