DreEX6038613 @ danRer10
Exon Skipping
Gene
ENSDARG00000091090 | xirp2b
Description
xin actin-binding repeat containing 2b [Source:ZFIN;Acc:ZDB-GENE-030521-26]
Coordinates
chr9:49755734-49771262:-
Coord C1 exon
chr9:49771193-49771262
Coord A exon
chr9:49770994-49771088
Coord C2 exon
chr9:49755734-49755864
Length
95 bp
Sequences
Splice sites
3' ss Seq
ACATTTGCCTTTGCTTGCAGAGG
3' ss Score
9.24
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TCTACACGTGATCAAATCGCTCATAAACGGGAAATTATGTCCAGTTATGAGAATCATAACAATCAAACAG
Seq A exon
AGGAGGATGAGTATTATCCAAAGCTCTCCACTAAAGAACTGGCACAGCATTTCGAGAAGACTATTGAAGAAGCAGCCCCTAGCAAGAAAATCAAG
Seq C2 exon
ATTCGAGTACCAAAATCCGAGATGTGTGCGGTGTGCAAGAAGAGGGTTTACCCGATGGAAGGCCTGATAGCAGACAAAAAGAAGTTCCATAAATCATGCTTTTTCTGCGAGCACTGCAAAAACAAATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091090-'5-9,'5-3,6-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
PF103674=Vps39_2=PU(23.9=87.5)
A:
PF103674=Vps39_2=FE(36.4=100)
C2:
PF103674=Vps39_2=PD(38.6=77.3),PF0041217=LIM=PU(59.6=77.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGTGATCAAATCGCTCAT
R:
GTGCTCGCAGAAAAAGCATGA
Band lengths:
181-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]