HsaEX6016447 @ hg38
Exon Skipping
Gene
ENSG00000163092 | XIRP2
Description
xin actin binding repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:14303]
Coordinates
chr2:167240664-167251947:+
Coord C1 exon
chr2:167240664-167240736
Coord A exon
chr2:167241777-167241910
Coord C2 exon
chr2:167242569-167251947
Length
134 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTTTTCTGTTTGTAGTCA
3' ss Score
7.78
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTCTCTCATCTTGAAAAGCACACCGAGGAAGTAAACCAAGCATCTCAGTTTCATCAATATGTTCAAGAAACTG
Seq A exon
TCATTGATACACCTGAGGATGAAGAGATTCCAAAGGTTTCGACTAAGTTGTTAAAAGAGCAGTTTGAAAAGTCTGCCCAGGAAAAGATCCTTTATTCTGACAAAGAGATGACAACCCCAGCCAAGCAGATTAAG
Seq C2 exon
ACTGAAAGTGAATATGAAGAGACTTTCAAGCCATCATCAGTTGTGAGTACCTCTTCCACTTCTTGCGTTTCAACCAGCCAGAGGAAGGAAACATCAACTACAAGATATAGTGATCACAGTGTCACTTCCTCAACTCTGGCACAAATTAATGCTACTTCTTCAGGAATGACAGAAGAATTTCCTCCTCCCCCACCTGACGTACTTCAAACTTCAGTAGATGTGACAGCATTTTCCCAGTCCCCTGAACTGCCCAGTCCTCCTAGAAGACTACCAGTCCCCAAAGATGTATATTCCAAGCAAAGAAATTTGTATGAATTAAACCGTTTATATAAACACATCCATCCTGAGTTAAGAAAAAACTTAGAAAAAGATTATATCAGTGAAGTTTCTGAGATTGTTTCTAGTCAAATGAACTCAGGGAGTTCAGTCTCAGCAGATGTGCAACAAGCCCGGTATGTTTTTGAAAACACAAATGACAGTTCTCAAAAAGATCTGAACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163092-'13-25,'13-24,14-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.567 C2=0.511
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCACACCGAGGAAGTAAACCA
R:
GGTGGGGGAGGAGGAAATTCT
Band lengths:
250-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains