RnoEX6017212 @ rn6

Exon Skipping

Gene

ENSRNOG00000034258 | Xirp2

Description

xin actin-binding repeat containing 2 [Source:RGD Symbol;Acc:1302980]

Coordinates

chr3:53630945-53642650:+

Coord C1 exon

chr3:53630945-53631017

Coord A exon

chr3:53632436-53632569

Coord C2 exon

chr3:53633326-53642650

Length

134 bp

Sequences

Splice sites

3' ss Seq

TTACCTACTTCTCTTTGTAGTCA

3' ss Score

8

5' ss Seq

AAGGTAAGG

5' ss Score

10.51

Exon sequences

Seq C1 exon

ATGTCACATCTTGAAAAGCACACGGAGGAAACAAACCAAGCTTCACAGTTTCGTCAATATGTTCAAGAAACAG

Seq A exon

TCATTGATACACCAGAAGACGAAGAGATTCCTAAGGTTTCCACTAAGATTTTAAAAGAGCAATTTGAAAAGACTGCCCAGGAAAACTTCCTCTACTCTGATAAAGAAACAACAACCCCAGCCAAGTGTATAAAG

Seq C2 exon

ATTGAAAATGACAGTGAAGAAACCTTAAAGCCATCATCGGCTATGGGTACCTCTTCTTATACTTCAGCCAGGCAAAGCAAGGAAACTTCAACCTCAAGTTATAGTAATCACAGTCTGACTTCAACAATCCTGGCACAAGAAAAGGGCACTCCTTCAGGAAAGATGGAAGAATTTCCTCCTCCCCCACCTGATGTTTTTCAAACACCAATGGATGTGACAGCATTTTCCCAGTCCCCTGAATTCCCCAGCCCTCCTAGAAGACTGCCAATGCCCAGAGATGTATATTCCAAGCAACGAAATTTGTATGAATTAAACCGTTTATATAGGCATATCCATCCTGAGTTAAGAAAAAACTTAGAAAAAGATTATATCAGTGAGGTTTCTGAAATTGTTTCTAGTCACATAAACTCAGGGAACTCGATATCAGCAGGTGTACAACAAGCTCGGTATGTTTTCGAAAATACGAATGACAGTTCTCAGAAAGATTTGAGCTCAGAAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000034258-'6-8,'6-7,8-8=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=1.000 A=0.867 C2=0.518

Domain overlap (PFAM):

C1:

NO

A:

NO

C2:

PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5)

Main Inclusion Isoform:

ENSRNOP00000048045