GgaEX6042486 @ galGal3
Exon Skipping
Gene
ENSGALG00000020715 | O42419_CHICK
Description
NA
Coordinates
chr7:20986462-20988894:+
Coord C1 exon
chr7:20986462-20986525
Coord A exon
chr7:20987758-20987899
Coord C2 exon
chr7:20988688-20988894
Length
142 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTGTTTTTTCCTAGTAA
3' ss Score
6.71
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTCATTTTTATCGTCTAGAAGGACAAAAGGATTATCTGCTTTGTGGCAATAGCTCAGATGCAGG
Seq A exon
TAAATGTCCAGAAGAGTTTATCTGTGTGAAAGCAGGTAGAAACCCCAACTATGGATATACTAGCTTCGACACATTCAGTTGGGCTTTCTTGTCCCTGTTTCGACTTATGACACAGGACTACTGGGAAAATCTTTATCAGCTG
Seq C2 exon
ACATTACGAGCTGTTGGCAAAACATACATGATATTTTTTGTTCTGGTCATTTTTCTGGGTTCCTTCTATTTGATTAATTTGATTTTGGCTGTGGTTGCCATGGCCTATGAAGAACAAAATCAAGCAACTATGGTTGAAGCAGAACAGAGGGAAGCAGACTTGCAGCAGATGCTTGAACAGCTGAAGAAGCAGCAAGAAGAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020715-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.064
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(8.2=100)
A:
PF0052026=Ion_trans=FE(18.4=100)
C2:
PF0052026=Ion_trans=PD(12.1=44.9),PF100694=DICT=PU(55.7=71.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATTATCTGCTTTGTGGCA
R:
TGAGCTTCTTCTTGCTGCTTCT
Band lengths:
243-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]