GgaEX6042500 @ galGal3
Exon Skipping
Gene
ENSGALG00000010943 | E1C4S3_CHICK
Description
NA
Coordinates
chr7:21089026-21090206:+
Coord C1 exon
chr7:21089026-21089089
Coord A exon
chr7:21089709-21089850
Coord C2 exon
chr7:21090000-21090206
Length
142 bp
Sequences
Splice sites
3' ss Seq
CACCCAGTTTGTCTTTGCAGGCA
3' ss Score
8.33
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GTCATTTTTATTTTCTGGAAGGGCAAAGTGATGCTCTCCTTTGTGGAAACAGTTCTGATGCTGG
Seq A exon
GCAGTGCCCAGAAGGTTACACGTGTGTGAAAGCTGGTAGAAACCCCAATTATGGCTACACAAGTTTTGACACTTTCAGCTGGGCTTTCTTGTCACTGTTTCGTTTGATGACCCAAGACTTCTGGGAAAATCTTTATCAACTG
Seq C2 exon
ACACTACGTGCTGCTGGGAAAACATACATGATATTTTTCGTTTTGGTGATTTTTCTGGGCTCGTTCTATCTGATCAACTTGATCCTGGCTGTGGTTGCCATGGCCTATGAAGAGCAGAACCAAGCAACCCTTGAAGAAGCAGAGCAGAAAGAGGCAGAATTTCAACAAATGCTGGAACAGCTAAAGAAGCAGCAAGAAGCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010943-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
75%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.134
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(7.8=100)
A:
PF0052026=Ion_trans=FE(17.5=100),PF0253517=Zip=PU(11.6=41.7)
C2:
PF0052026=Ion_trans=PD(11.6=44.9),PF0253517=Zip=FE(39.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAAGGGCAAAGTGATGCT
R:
TGCTTCTTGCTGCTTCTTTAGCT
Band lengths:
251-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]