GgaEX6042520 @ galGal4
Exon Skipping
Gene
ENSGALG00000011009 | SCN2A
Description
sodium channel, voltage gated, type II alpha subunit [Source:HGNC Symbol;Acc:HGNC:10588]
Coordinates
chr7:19352138-19358171:-
Coord C1 exon
chr7:19357965-19358171
Coord A exon
chr7:19355539-19355826
Coord C2 exon
chr7:19352138-19352485
Length
288 bp
Sequences
Splice sites
3' ss Seq
GTGCTTATTTGTACATACAGGCA
3' ss Score
6.4
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
ACACTGCGTGCTGCTGGAAAAACATATATGATATTTTTTGTTTTGGTCATTTTCCTGGGCTCTTTCTACCTGATTAATTTGATCCTGGCTGTGGTTGCTATGGCCTATGAAGAACAGAATCAAGCAACCATGGAAGAAGCAGAACAGAAAGAAGCAGAATTTCAGCAAATGCTGGAACAACTGAAAAAGCAACAGGAAGAAGCTCAG
Seq A exon
GCAGCAGCAGCAGCTGCAGCAGCTGACTCAAGAGATTATAGCGGAGTAGGTGGAATAGGTGGATTCTCTGAGAGTTCTTCTGAGGCATCCAAACTGAGTTCAAAGAGTGCTAAAGAGAGGAGGAATAGAAGAAAGAAAAAAAAGCAAAAAGAACAAGCTGAAGGTGAGAAGGATGAGGAAGAATTTCGCAAATCCGAATCAGAGGACAGCATCAAAAGAAAAGGCTTCCGATTTTCCATTGAGGGGAATAGACTGACATATGAAAAGAGATTCTCTTCCCCACACCAG
Seq C2 exon
TCTTTGCTGAGTATTCGTGGCTCCCTATTTTCCCCAAGGCGCAATAGCAGAACAAGTCTTTTCAGCTTCAGAGGTCGTGCAAAGGATGTAGGATCTGAAAATGACTTTGCTGATGATGAGCACAGCACTTTTGAAGACAATGAGAGCAGAAGAGATTCTCTCTTTGTTCCTCATAGACATGGTGAACGGCGCAACAGTAACATTAGTCAGGCCAGTAGGTCATCCAGGACAGTACCTCCACTTCCAGTGAACGGGAAGATGCACAGCACTGTGGATTGTAATGGAGTAGTTTCTTTAGTCGGTGGGCCTCCAGCTCTGACGTCGCCTACTGGACAGCTTCTGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011009-'7-10,'7-8,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=0.526 C2=0.750
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(11.6=44.9),PF143621=DUF4407=PU(39.3=79.7)
A:
PF143621=DUF4407=PD(58.6=85.4),PF119333=DUF3451=PU(30.8=71.9)
C2:
PF119333=DUF3451=FE(51.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGTGCTGCTGGAAAAACAT
R:
ACATCCTTTGCACGACCTCTG
Band lengths:
292-580
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]