RnoEX0078546 @ rn6
Exon Skipping
Gene
ENSRNOG00000005018 | Scn2a
Description
sodium voltage-gated channel alpha subunit 2 [Source:RGD Symbol;Acc:3632]
Coordinates
chr3:51756438-51771473:+
Coord C1 exon
chr3:51756438-51756644
Coord A exon
chr3:51757905-51758192
Coord C2 exon
chr3:51771126-51771473
Length
288 bp
Sequences
Splice sites
3' ss Seq
GCTTACGTTGTACCTTCTAGGCA
3' ss Score
7.55
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
ACCTTGCGTGCTGCCGGGAAAACATACATGATATTTTTTGTGCTGGTCATTTTCTTGGGCTCATTCTACCTGATAAATTTGATCCTGGCTGTGGTGGCCATGGCCTACGAGGAACAGAACCAGGCCACACTGGAGGAGGCTGAACAGAAGGAGGCAGAGTTTCAGCAGATGCTGGAGCAACTGAAGAAGCAGCAGGAGGAAGCTCAG
Seq A exon
GCAGCAGCTGCAGCAGCGTCCGCAGAATCCAGAGACTTCAGCGGGGCAGGCGGGATAGGTGTTTTCTCGGAGAGTTCGTCAGTAGCCTCAAAGTTAAGTTCCAAAAGTGAAAAGGAGTTGAAAAACAGAAGAAAGAAAAAGAAACAGAAAGAACAGGCTGGGGAGGAAGAGAAGGAAGACGCGGTGCGGAAATCTGCCTCTGAGGACAGCATACGAAAGAAAGGCTTCCGGTTTTCCCTGGAAGGAAGTAGATTGACCTACGAGAAGAGATTTTCCTCTCCGCACCAG
Seq C2 exon
TCTCTCTTGAGCATCCGAGGCTCCCTATTTTCTCCAAGACGCAACAGTAGAGCAAGCCTTTTCAGCTTCAAAGGTCGAGTGAAGGATATTGGTTCCGAAAATGACTTTGCAGACGATGAACACAGCACATTTGAGGACAACGACAGCAGAAGAGACTCTCTATTTGTACCACACAGACATGGAGAAAGGCGTCCTAGCAATGTCAGCCAGGCCAGCCGTGCCTCCCGGGGGATACCCACTCTACCCATGAATGGGAAGATGCACAGTGCAGTGGACTGCAACGGTGTGGTGTCCCTGGTTGGAGGCCCCTCTGCGCTCACATCGCCTGTGGGGCAGCTGCTGCCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005018-'14-20,'14-18,15-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.333 C2=0.578
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(11.6=44.9),PF0253517=Zip=FE(40.7=100)
A:
PF0253517=Zip=PD(44.9=78.1),PF119333=DUF3451=PU(30.9=71.9)
C2:
PF119333=DUF3451=FE(51.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGAACCAGGCCACACTG
R:
CTGGCTGACATTGCTAGGACG
Band lengths:
306-594
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]