GgaEX6042521 @ galGal3
Exon Skipping
Gene
ENSGALG00000011009 | F1NN72_CHICK
Description
NA
Coordinates
chr7:21328352-21330590:-
Coord C1 exon
chr7:21330243-21330590
Coord A exon
chr7:21329182-21329314
Coord C2 exon
chr7:21328352-21328590
Length
133 bp
Sequences
Splice sites
3' ss Seq
TATCAGTGTTTTATTTTCAGGGC
3' ss Score
9.16
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TCTTTGCTGAGTATTCGTGGCTCCCTATTTTCCCCAAGGCGCAATAGCAGAACAAGTCTTTTCAGCTTCAGAGGTCGTGCAAAGGATGTAGGATCTGAAAATGACTTTGCTGATGATGAGCACAGCACTTTTGAAGACAATGAGAGCAGAAGAGATTCTCTCTTTGTTCCTCATAGACATGGTGAACGGCGCAACAGTAACATTAGTCAGGCCAGTAGGTCATCCAGGACAGTACCTCCACTTCCAGTGAACGGGAAGATGCACAGCACTGTGGATTGTAATGGAGTAGTTTCTTTAGTCGGTGGGCCTCCAGCTCTGACGTCGCCTACTGGACAGCTTCTGCCAGAG
Seq A exon
GGCACTACTACAGAAACTGACTTAAGAAAAAGAAGGTCTAGTTCTTACCAGGTTCCTATGGACTACCTAACAGATCCTAGTGCAAGGCAGCGAGCAATGAGTATAGCCAGCATGCTCACAAATACGATGGAAG
Seq C2 exon
AACTTGAGGAATCAAGACAGAAATGCCCACCGTGCTGGTATAAATTTGCTAACACTTGCTTGATTTGGGACTGCTGCACTCCATGGCTGAAAGTCAAACATATTGTAAATTTGATTGTGATGGACCCATTTGTTGATCTGGCCATTACTATCTGCATTGTTCTAAACACTCTGTTCATGGCCATGGAGCACTATCCAATGACGGAACAGTTTAGTGGTGTCCTTTCAGTAGGAAACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011009-'18-17,'18-16,21-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.311 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=FE(51.3=100)
A:
PF119333=DUF3451=PD(16.5=82.2)
C2:
PF0052026=Ion_trans=PU(1.6=3.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACGGCGCAACAGTAACAT
R:
GAGTGCAGCAGTCCCAAATCA
Band lengths:
247-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]