BtaEX6009411 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038180 | SCN2A
Description
sodium channel, voltage gated, type II alpha subunit [Source:HGNC Symbol;Acc:HGNC:10588]
Coordinates
chr2:31027735-31036440:-
Coord C1 exon
chr2:31036093-31036440
Coord A exon
chr2:31032200-31032332
Coord C2 exon
chr2:31027735-31027973
Length
133 bp
Sequences
Splice sites
3' ss Seq
ATATGAAATTTTTTTTTTAGGGC
3' ss Score
9.43
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TCTTTACTGAGCATCCGTGGCTCCCTGTTCTCTCCAAGACGCAACAGTAGGGCGAGCCTTTTCAGCTTCAGAGGCCGAGCCAAGGATATTGGCTCTGAGAATGATTTTGCGGATGATGAGCACAGCACCTTTGAGGACAATGACAGCAGAAGAGACTCTCTGTTTGTGCCGCACAGACATGGGGAGCGGCGCCACAGCAACGTCAGCCAGGCCAGCCGTGCCTCCAGGGTGCTCCCCATTCTGCCCATGAACGGGAAGATGCACAGCGCTGTGGACTGCAACGGAGTGGTCTCCCTGGTTGGGGGCCCTTCTGCCCTCACATCTCCTGCTGGGCAGCTCCTACCAGAG
Seq A exon
GGCACAACTACTGAAACAGAAATAAGAAAGAGACGGTCCAGTTCTTATCATGTTTCCATGGATCTTTTGGAAGATCCTACAGCAAGGCAAAGAGCAATGAGTATGGCTAGTATTTTGACCAACACCATGGAAG
Seq C2 exon
AACTTGAAGAATCCAGACAGAAATGCCCACCGTGCTGGTATAAATTTGCTAACATGTGTTTGATTTGGGACTGCTGTAAGCCATGGTTAAAGGTGAAACATGTTGTCAACCTGGTTGTGATGGACCCTTTTGTTGACCTGGCCATCACCATCTGCATTGTCTTAAACACCCTCTTCATGGCCATGGAGCACTATCCCATGACGGAGCAGTTTAGCAGTGTGCTGTCAGTTGGGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038180-'14-15,'14-13,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=0.244 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=FE(51.3=100)
A:
PF119333=DUF3451=PD(16.5=82.2)
C2:
PF0052026=Ion_trans=PU(1.6=3.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGAACGGGAAGATGCACA
R:
GGTGATGGCCAGGTCAACAAA
Band lengths:
253-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]