RnoEX6017133 @ rn6
Exon Skipping
Gene
ENSRNOG00000005018 | Scn2a
Description
sodium voltage-gated channel alpha subunit 2 [Source:RGD Symbol;Acc:3632]
Coordinates
chr3:51771126-51780941:+
Coord C1 exon
chr3:51771126-51771473
Coord A exon
chr3:51776208-51776337
Coord C2 exon
chr3:51780703-51780941
Length
130 bp
Sequences
Splice sites
3' ss Seq
CTGGAACCCTGGTATTGCAGGGC
3' ss Score
2.73
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TCTCTCTTGAGCATCCGAGGCTCCCTATTTTCTCCAAGACGCAACAGTAGAGCAAGCCTTTTCAGCTTCAAAGGTCGAGTGAAGGATATTGGTTCCGAAAATGACTTTGCAGACGATGAACACAGCACATTTGAGGACAACGACAGCAGAAGAGACTCTCTATTTGTACCACACAGACATGGAGAAAGGCGTCCTAGCAATGTCAGCCAGGCCAGCCGTGCCTCCCGGGGGATACCCACTCTACCCATGAATGGGAAGATGCACAGTGCAGTGGACTGCAACGGTGTGGTGTCCCTGGTTGGAGGCCCCTCTGCGCTCACATCGCCTGTGGGGCAGCTGCTGCCGGAG
Seq A exon
GGCACAACTACTGAGACAGAAATAAGGAAGAGGAGATCCAGTTCTTACCACGTCTCTATGGACTTGTTGGAAGACCCTTCAAGGCAAAGGGCAATGAGTATGGCCAGTATTTTGACGAACACTATGGAAG
Seq C2 exon
AACTTGAAGAATCCAGACAGAAATGCCCACCCTGCTGGTATAAATTTGCTAATATGTGCCTGATTTGGGACTGTTGTAAGCCATGGCTAAAGGTAAAACACGTTGTCAATCTGGTAGTGATGGATCCATTTGTTGACCTGGCCATCACCATCTGCATTGTGTTAAATACGCTCTTCATGGCCATGGAGCACTACCCCATGACTGAGCAGTTCAGCAGTGTGCTGTCTGTTGGGAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005018-'17-24,'17-21,18-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.578 A=0.449 C2=0.027
Domain overlap (PFAM):
C1:
PF119333=DUF3451=FE(51.6=100)
A:
PF119333=DUF3451=PD(16.1=81.8)
C2:
PF0052026=Ion_trans=PU(1.6=3.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCTAGCAATGTCAGCCAG
R:
GCCATGGCTTACAACAGTCCC
Band lengths:
246-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]