GgaEX6042521 @ galGal4
Exon Skipping
Gene
ENSGALG00000011009 | SCN2A
Description
sodium channel, voltage gated, type II alpha subunit [Source:HGNC Symbol;Acc:HGNC:10588]
Coordinates
chr7:19350247-19352485:-
Coord C1 exon
chr7:19352138-19352485
Coord A exon
chr7:19351077-19351209
Coord C2 exon
chr7:19350247-19350485
Length
133 bp
Sequences
Splice sites
3' ss Seq
TATCAGTGTTTTATTTTCAGGGC
3' ss Score
9.16
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TCTTTGCTGAGTATTCGTGGCTCCCTATTTTCCCCAAGGCGCAATAGCAGAACAAGTCTTTTCAGCTTCAGAGGTCGTGCAAAGGATGTAGGATCTGAAAATGACTTTGCTGATGATGAGCACAGCACTTTTGAAGACAATGAGAGCAGAAGAGATTCTCTCTTTGTTCCTCATAGACATGGTGAACGGCGCAACAGTAACATTAGTCAGGCCAGTAGGTCATCCAGGACAGTACCTCCACTTCCAGTGAACGGGAAGATGCACAGCACTGTGGATTGTAATGGAGTAGTTTCTTTAGTCGGTGGGCCTCCAGCTCTGACGTCGCCTACTGGACAGCTTCTGCCAGAG
Seq A exon
GGCACTACTACAGAAACTGACTTAAGAAAAAGAAGGTCTAGTTCTTACCAGGTTCCTATGGACTACCTAACAGATCCTAGTGCAAGGCAGCGAGCAATGAGTATAGCCAGCATGCTCACAAATACGATGGAAG
Seq C2 exon
AACTTGAGGAATCAAGACAGAAATGCCCACCGTGCTGGTATAAATTTGCTAACACTTGCTTGATTTGGGACTGCTGCACTCCATGGCTGAAAGTCAAACATATTGTAAATTTGATTGTGATGGACCCATTTGTTGATCTGGCCATTACTATCTGCATTGTTCTAAACACTCTGTTCATGGCCATGGAGCACTATCCAATGACGGAACAGTTTAGTGGTGTCCTTTCAGTAGGAAACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011009-'12-13,'12-12,15-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.311 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=FE(51.3=100)
A:
PF119333=DUF3451=PD(16.5=82.2)
C2:
PF0052026=Ion_trans=PU(1.6=3.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACGGCGCAACAGTAACAT
R:
GAGTGCAGCAGTCCCAAATCA
Band lengths:
247-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]